PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000147232

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 264aa MW: 28477.7 Da PI: 7.5476

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000147232	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	146	184	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +r+ +++ L++l+ + +K + a++L +A+ YI+ Lq MDP0000147232 146 RKERLGERITALQKLVSPY-----GKTDTASVLHEAMGYIRFLQ 184 6778889999999999998.....9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.045	134	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-11	145	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.53E-6	145	188	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.7E-8	145	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MAENGGFEGD HLAVTEGPGF SQLLFPADEV VNLAVDSDQT FNYTRSSTYP TQIKPPKILC 60 FGNYDQTHGN GVEIEFSETA KKSAAACSDS SSVSSTGTAS INAMPKSNNK RQKGSAPIST 120 TATPPTQRAA KKTKSENPTS AGNGKRKERL GERITALQKL VSPYGKTDTA SVLHEAMGYI 180 RFLQEQVQVL YSPYLQRLPP SVPVHGGEVK QEGRRSELRS QGLCLVPMEY TTHAGNSNGA 240 DFWSPAMANI YDVSSPSTKY GMED

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.10980	1e-122	bud\| cell culture

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009370127.1	1e-168	PREDICTED: transcription factor bHLH113-like
TrEMBL	A0A498J0U0	0.0	A0A498J0U0_MALDO; Uncharacterized protein
STRING	XP_008338238.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10321	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	6e-43	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000147232