PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000147009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 398aa MW: 43848 Da PI: 4.6656 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 79 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p r r +lg+f ta +Aa a+++a+k+++g MDP0000147009 79 CNYRGVRQRT-WGKWVAEIREPD----RgSRLWLGTFPTALDAALAYDEAAKAMYG 129 56*****999.**********82....34************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.87E-30 | 79 | 139 | No hit | No description |
Pfam | PF00847 | 7.8E-13 | 79 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-29 | 80 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.2E-34 | 80 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-19 | 80 | 138 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.232 | 80 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-9 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-9 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MGAYDQGANM SSLPLDSSRK RKTRSRRDGN SVAETLEKWK EYNKKLESVN NEGKTRKVPA 60 KGSKKGCMKG KGGPENARCN YRGVRQRTWG KWVAEIREPD RGSRLWLGTF PTALDAALAY 120 DEAAKAMYGT GARLNLPHAA NYHPSSSLET SSVATPSGSS AVATPGCSTS TSTSSRSEIC 180 GDEDSKLFLN VKKEDGEGES RMYPWSTAVP QASGMVKPEI IEDFTMDYLR NXQQQPVVKP 240 EAGVEDHNWN GGEGFIGDYS ENFTTDELFD MDEMFDVNEL LMPSDDISLC NSGSEQVWRA 300 DVGQSGMETL SSERPSNLSY QLQFPDAKLL GSLQHMEHAP LNFEYGFDFK KQEKEGSNHT 360 GQDDQGYFNL GLSDLDLEGF TGGITQSGDG GYNYSMEM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-18 | 80 | 137 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 22 | SRKRKT |
2 | 20 | 27 | RKTRSRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30213 | 0.0 | bud| fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ790526 | 0.0 | JQ790526.1 Malus sieversii DREB2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008354169.2 | 0.0 | LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A0A498KNR4 | 0.0 | A0A498KNR4_MALDO; Uncharacterized protein | ||||
STRING | XP_008354169.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.1 | 2e-43 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | MDP0000147009 |