PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000145825
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 360aa    MW: 40269.2 Da    PI: 5.0634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000145825genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-102853251055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r+RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  MDP0000145825 285 RKRRERINERLRTLQHLVPNG-----TKVDISTMLEEAVHYVKFLQ 325
                    9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-14274341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.218275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-12280336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-12284329No hitNo description
PfamPF000108.0E-8285325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MESVGVFADG EWESLNRLFT SEEVEFXPHF LSQGNSFPFQ HNEGMGFETR ESFYPNIPGA  60
ETFFHHPSSD SPNSNVDYLS SQESCNYGNH NHGIFTTILN QENCYFSNSC NFPVSNIDVS  120
ESMDVYMNRD GKSFASFVPA FSDIVMHGSE CNKEDSGSDS QPAIVPVPEK ELQLKSVHDA  180
PEKSSNDTSD NNPKKKPRLS KDVEKSKKNN VRSKKGQKGN SDVKFKDEEE RLQSTSSCTS  240
EGDNGSLEIN GGETSDPKAS STLNLNGKTR ANRGSATDPQ SLYARKRRER INERLRTLQH  300
LVPNGTKVDI STMLEEAVHY VKFLQLQIKL LSSDDMWMYA PIAYNGMDIA LDLQKLSPLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357373.20.0transcription factor bHLH85-like
TrEMBLA0A498JE080.0A0A498JE08_MALDO; Uncharacterized protein
STRINGXP_008357373.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.19e-49ROOT HAIR DEFECTIVE 6-LIKE 2