PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000145344 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 27238.1 Da PI: 6.7387 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H MDP0000145344 74 YTCTFCRREFRSAQALGGHMNVH 96 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.79E-6 | 71 | 101 | No hit | No description |
SMART | SM00355 | 0.0066 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.157 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-5 | 74 | 97 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MAKLGLFSRT DLQNLALLQQ NQHQTQLSSP NLVPKAWMWN PKPVQEPEDD SWEVRAFAED 60 TGNVMGTTWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHQSHPQM NPAAISSAST 120 TSLIIPTQEF VNSNGGLSLV YQLPSPSSIN GASFNTATTW MSSSSTNGHG VESLPSILHS 180 VSPNIPPHDY LVSVVPPAGR SNSNSQYCHS NKSSAHDDPE PSTSGTENGN FEELDLELRL 240 GHGRPAIPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-13 | 69 | 96 | 2 | 29 | superman protein |
2l1o_A | 3e-13 | 69 | 96 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028952233.1 | 0.0 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A498HL36 | 0.0 | A0A498HL36_MALDO; Uncharacterized protein | ||||
STRING | XP_009377082.1 | 1e-160 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3525 | 31 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 3e-39 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000145344 |