PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000143134 | ||||||||
Common Name | SUP5a | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 189aa MW: 21437 Da PI: 6.7411 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 35 | 57 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H MDP0000143134 35 YECTFCKRGFTNAQALGGHMNIH 57 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 31 | 61 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.21E-7 | 32 | 61 | No hit | No description |
SMART | SM00355 | 0.0097 | 35 | 57 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.136 | 35 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 37 | 57 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MESWRPRTPQ TSSSDEDQVR SDDHNSGAAT VKRSYECTFC KRGFTNAQAL GGHMNIHRKD 60 RVKPMQHISG KSSLNANHYS NEDQYISMST SHHHHQYSSV PLSSQGVSGY YPVFDQMNYQ 120 RYFQPTGSNP RIPYGYDLDD SSVGSRSHSL GMNQELXGTN LSLQLEDDEF RRGVRSNDEV 180 DLELRLGHG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ418469 | 0.0 | HQ418469.1 Malus x domestica transcriptional regulator superman (SUP5a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028952463.1 | 1e-139 | transcriptional regulator TAC1-like | ||||
TrEMBL | F6KKF6 | 1e-137 | F6KKF6_MALDO; Transcriptional regulator superman | ||||
STRING | XP_008372799.1 | 1e-139 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 3e-15 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000143134 |