PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000141505 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 185aa MW: 21094.3 Da PI: 7.3052 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 131.4 | 9.9e-41 | 2 | 183 | 187 | 374 |
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 ed++ + ++v+ +Ea++V l l ++ +++ +le+ +++ +++l P v+vv+ ea+hns+s+++rf++al yysa+fd+le+ + +++ +r MDP0000141505 2 EDVKDQLFDVEDDEAVVVYAPLILRTMISRPSCLEN----LVRXMRTLXPCVMVVIXVEANHNSPSLVNRFIDALFYYSAIFDCLETCM-KQEMNR 92 677778899*******************88888888....***********************************************96.444555 PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +E l+++ i+n+v +eg+er++r ++e Wr+ + ++ + +++ls+ a qa+l +k++s +++ + ++l+ gWk+ p+ s+SaW+ MDP0000141505 93 VLIE-GLFHEGIRNIVVAEGSERVARSVKMEXWRAFFARFRMVEINLSNAALFQASLXAKKYGSPPCTLDRNGKCLTVGWKGTPIHSLSAWK 183 5555.56********************************************************999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 17.22 | 1 | 163 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.4E-38 | 2 | 183 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MEDVKDQLFD VEDDEAVVVY APLILRTMIS RPSCLENLVR XMRTLXPCVM VVIXVEANHN 60 SPSLVNRFID ALFYYSAIFD CLETCMKQEM NRVLIEGLFH EGIRNIVVAE GSERVARSVK 120 MEXWRAFFAR FRMVEINLSN AALFQASLXA KKYGSPPCTL DRNGKCLTVG WKGTPIHSLS 180 AWKFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-13 | 42 | 182 | 238 | 378 | Protein SCARECROW |
5b3h_A | 1e-13 | 42 | 182 | 237 | 377 | Protein SCARECROW |
5b3h_D | 1e-13 | 42 | 182 | 237 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028956538.1 | 1e-132 | DELLA protein GAI1-like | ||||
TrEMBL | M5VUD5 | 1e-109 | M5VUD5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008363729.1 | 1e-131 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-26 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000141505 |