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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MDP0000141160 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 340aa MW: 37580.2 Da PI: 6.3071 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 37.1 | 8.5e-12 | 1 | 47 | 38 | 86 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
mre+gf rsp++C++kw+nl k++kk +++ k + +s +++y+++l+
MDP0000141160 1 MREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--ARSAKMSYYEDLQ 47
89*****************************997..56678*****997 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 6.4E-8 | 1 | 48 | No hit | No description |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 340 aa Download sequence Send to blast |
MREKGFDRSP TMCTDKWRNL LKEFKKARHQ VKVGARSAKM SYYEDLQDLL RDPSTNSNST 60 TVNSNHNSVS AAIAAVATPP KLDSFVRFSD KGLEDSTIPF GPMEANDRSA LNLERQLDHD 120 GGDPLAITAA DAVAVNGFLL PCSPSSLLGP PNSQINLWQY GRTLMQQPHA TFLAEFNNGD 180 EMKTTAEDIV VAYKAAQDVA LAKLAPLISV TSALIFLLQS PSSSFHPSFN CYTWCAHPEQ 240 ADLQSQARQC LKDDESDAAK QGCPVMSEHE LKEYEINLKD CGPTVLDALF MLFSSRSPQQ 300 YLHQYLKAPR DPAMASLSVT YSPSFCPARM LRSFSPTRLX |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 2jmw_A | 1e-17 | 1 | 45 | 43 | 86 | DNA binding protein GT-1 |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Mdo.15624 | 0.0 | fruit| leaf | ||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008341347.1 | 4e-82 | trihelix transcription factor GT-4-like | ||||
| TrEMBL | A0A314URK4 | 2e-61 | A0A314URK4_PRUYE; Trihelix transcription factor GT-4-like | ||||
| TrEMBL | M5X4Z8 | 4e-62 | M5X4Z8_PRUPE; Uncharacterized protein | ||||
| STRING | XP_008341347.1 | 2e-81 | (Malus domestica) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G13450.3 | 3e-43 | Trihelix family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | MDP0000141160 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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