PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000140864
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 459aa    MW: 50422.6 Da    PI: 7.2609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000140864genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-09284330455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er RR + N+ f  Lr+++P+       K++ ++ L  Av YI++L+
  MDP0000140864 284 SHVEAERLRRVKFNHLFCVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 330
                    799***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-3423180IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.01E-14272341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-10278334No hitNo description
PROSITE profilePS5088814.037280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7284329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-12284341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-9286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEAILSSFSS PNFRDNPSSS TFKQRLQFIV ENNAAECWVY AIFWEATGDN NLSWGGGHYK  60
SSDINSYQPK LGFSDVDFVG NNDDGDVTDS EWFYFYSVSL TQSFTADNNI LGQAFCSGGF  120
VWLAGDHEFQ LYECERVKEA RMHGIQTLVC IATLSGVVEL ASLDVIKQDW GLVHLTKSLF  180
RSNDDDDGHN RLSNQQASRE ASGLVPTLKN GRCLGAQEEL TTQESGGNEA KPINIGGSSI  240
SPPDSRSNSV GKFTSKNIEN TQSKKRGRPS SNHGAATRAS QLLSHVEAER LRRVKFNHLF  300
CVLRSVVPNV SKMDRSSLLA DAVAYINQLK AKVEALEAKI QAQLPPPQKS KVDHNNNVIN  360
IINLGKNSSY DSNRVGGCGV EVDVKIIGSS EAIIRVLCPN QDYPYARLMN VLKGLGLQVS  420
HGSISSVNEL MIQNVVTRLP YGFTSGKALR LGIIKGWYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-26111832195Transcription factor MYC3
4rqw_B3e-26111832195Transcription factor MYC3
4rs9_A3e-26111832195Transcription factor MYC3
4yz6_A3e-26111832195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385247.10.0transcription factor MYC3-like
TrEMBLA0A498IP060.0A0A498IP06_MALDO; Uncharacterized protein
STRINGXP_008385247.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-44bHLH family protein