PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000139739
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 795aa    MW: 89025.6 Da    PI: 5.9774
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000139739genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP78.59.9e-25141199159
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeek 59 
                    +Cqv++C +d++e+k yhrrh+vC ++++a++v ++g+++r+CqqC++fh ls+fDe+ 
  MDP0000139739 141 RCQVPSCGVDIKELKGYHRRHRVCLACANASTVDIDGESKRYCQQCGKFHVLSDFDEDC 199
                    6*******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.0E-24135198IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.717139216IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-23140200IPR004333Transcription factor, SBP-box
PfamPF031104.5E-19142208IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MQSPPPLSPT QSQRQRLDQP PRVSQMEIQP PLPSDDTSTV WEWGDLFDFT VDDDLSISWG  60
SAEYPDPEVG PAPEHLLEDP NSNSSRIRKR DPRLACPNFL AGHIPCACPE IDAKMMELEE  120
EEAGHGKKRV KTGRAPNGTA RCQVPSCGVD IKELKGYHRR HRVCLACANA STVDIDGESK  180
RYCQQCGKFH VLSDFDEDCL QLSSQLNEEE ELLESQGGQT PILCSVPESQ NIRSDSGVSF  240
MASGETQMDA RKHDSNNSLS PSNCDNKSYS SMCPTGRISF KLYDWNPAEF PRRLRHQIFE  300
WLASMPVELE GYIRPGCTIL TIFIAMPNFM WMKLLEDPVS YLHEFVIVPG KMLSGRXNIL  360
IYLNDMIFRV XKESKTAVTF LVSFSGKYLE YDYSPPSSHS QIDGXTASNL DHQFFQIQVP  420
QTESDCFGPA FIEWLVYLAG CALMRVLALQ TGISYGIWXN YVGLLITLTT RYNXGRESAV  480
SALFQIHIEN ESGLSNFIPV LIGDKEVCAE MKTIQXRFDE SLSLQGLHFS SRVSLSNSCE  540
ASSMRHTAFS DIILDIAWLL KKPLSENFQQ IMTASQIQRF NYLLNFLISI KSTTILDKVL  600
QNLKTLMVNM ELNSANNDSV DADMRLLQNY MKYARDLLCK KFESSXVSVR ESGRLVKXED  660
LVSQSQTCFQ NDGKSVAPFH CEDTEITVDG RLGITXGSTA NERSETVPXL SKKAVGKANF  720
IKELPSVAKC XTSGEVLRXR SSGMFLRFRP ALFVISATAI CVGLCAVLIH PHKTGCLLCL  780
VNKKPWFSNG IASKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A8e-27140197461squamosa promoter binding protein-like 7
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.15420.0fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340872.20.0squamosa promoter-binding-like protein 7
TrEMBLA0A498HR470.0A0A498HR47_MALDO; Uncharacterized protein
STRINGXP_008340871.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-163squamosa promoter binding protein-like 7