PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000136652
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 403aa    MW: 46094.4 Da    PI: 4.9158
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000136652genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.81e-36231531127
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    l pGf+F Ptde lv++yLk+k++g++ ++ +vi+e+d+ k+ePwd+p    + +ekew+fFs+ + k  ++ r+nr+t +g+ k+tg ++e+ ++
  MDP0000136652  23 LLPGFKFCPTDELLVCYYLKNKIQGTDSHFRSVIPEIDVSKYEPWDIPaFFPEVHEKEWFFFSRPKYKDINKPRRNRTTYKGFYKSTGGEREIRAE 118
                    579***************************999***************545556899*************************************98 PP

            NAM  96 .kgelvglkktLvfykg..rapkgektdWvmheyr 127
                     +++++g k+ L+f++g  r pk++ktdWv+he++
  MDP0000136652 119 eSQAVIGKKRFLTFHEGraRGPKATKTDWVIHEFT 153
                    556679*********7733678999********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-3818166IPR003441NAC domain
PROSITE profilePS5100539.36623187IPR003441NAC domain
PfamPF023652.3E-1825153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MSSSGSSSMT TAEGDEVHVN VILLPGFKFC PTDELLVCYY LKNKIQGTDS HFRSVIPEID  60
VSKYEPWDIP AFFPEVHEKE WFFFSRPKYK DINKPRRNRT TYKGFYKSTG GEREIRAEES  120
QAVIGKKRFL TFHEGRARGP KATKTDWVIH EFTETEVGSF VLCLLKKRSR SYKKPKGDPI  180
CGKLADSGAN SEDNQAAVSD XIPEPVEHLG YKGRGDVNSS EPPDGSRLID SNNILRLDDG  240
DDETGDVKFP DLDDPAASAR FLEXCVQPQK DMDLLQLHVA QQSRTYTKFE DFMDANIFYD  300
ECIEWQPQIG DEYSHVNCCN AFDXENQYTD NMTLEPCVRP EXYXGSVLHA DICDNGYNNW  360
QPTCWDKDSY LTDKKNISTX DKDKQYSSIA SNFDNQAXNK RKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-2461741171NO APICAL MERISTEM PROTEIN
1ut4_B2e-2461741171NO APICAL MERISTEM PROTEIN
1ut7_A2e-2461741171NO APICAL MERISTEM PROTEIN
1ut7_B2e-2461741171NO APICAL MERISTEM PROTEIN
4dul_A2e-2461741171NAC domain-containing protein 19
4dul_B2e-2461741171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.38062e-44bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955780.10.0transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A498KPH00.0A0A498KPH0_MALDO; Uncharacterized protein
STRINGXP_008361442.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.24e-31NAC domain containing protein 50