PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000135205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 22102.9 Da PI: 6.6054 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 89 | 139 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r +lg++ t+e+A a+++a+ kl+g MDP0000135205 89 HYRGVRRRP-WGKYAAEIRDPAKNG--ARLWLGTYETPEDAGLAYDRAAFKLRG 139 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 88 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.03E-29 | 88 | 149 | No hit | No description |
PROSITE profile | PS51032 | 23.472 | 89 | 147 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-12 | 89 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 89 | 148 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.7E-36 | 89 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-13 | 90 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-13 | 129 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MYGQETLELE SDDFALLESI HQHLDXLEPQ AMSVSXDNVP VIFPVLTTED WWESLFVVTD 60 HDAHATFGGL HGVVKNEAAV AHEVYAVKHY RGVRRRPWGK YAAEIRDPAK NGARLWLGTY 120 ETPEDAGLAY DRAAFKLRGC KAKLNFPHLI GSSSIEPVRV TPKRGRLPXH SSPXASTSDG 180 YETQMPKRNK AGIEYLAA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-31 | 88 | 153 | 4 | 69 | ATERF1 |
3gcc_A | 1e-31 | 88 | 153 | 4 | 69 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028960702.1 | 1e-107 | ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A498JC64 | 8e-95 | A0A498JC64_MALDO; Uncharacterized protein | ||||
STRING | XP_008363915.1 | 1e-142 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-43 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000135205 |