PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000133671
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 240aa    MW: 27444.5 Da    PI: 9.8552
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000133671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-161152344
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                   i+n++ r+ tf kR++g +KK +E+ +LCd+e++ i++++++
  MDP0000133671 11 IQNHTTRKLTFKKRKKGFMKKMSEITTLCDVEACAIVYGQND 52
                   99*************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.549151IPR002100Transcription factor, MADS-box
CDDcd002665.17E-16385No hitNo description
SuperFamilySSF554554.45E-24395IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-10323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSRKKVKLAY IQNHTTRKLT FKKRKKGFMK KMSEITTLCD VEACAIVYGQ NDTQPEVWPS  60
PSGVQGTYAK FRTMPSMEQT KKQLNMETFL RQRIDKAKDQ LRKQKKENRE KEMSILMSQC  120
LTGRSLHDLS MGDLTDLGWV VDHKVEDINR KVKKVHDELA WNGSNQVQVV PTQPPPPAIS  180
VGTMNMQQTQ SQAAPMEIMT LQDQQPQQQM GAIGANTGDD FLPFGDQNHQ SLWSNIPYYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYIQNHTTRKLTFKKRK
22125KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008373059.21e-178agamous-like MADS-box protein AGL80
TrEMBLA0A498JUI81e-131A0A498JUI8_MALDO; Uncharacterized protein
STRINGXP_008373059.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-45AGAMOUS-like 80