PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000133485
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 278aa    MW: 31096.9 Da    PI: 5.2243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000133485genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20129179255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +++GVr+++ +g+++AeIrdp++ng  +r++lg++ tae+Aa a+++a+ k++g
  MDP0000133485 129 HFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETAEGAALAYDQAAFKMRG 179
                    69*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.95E-31128189No hitNo description
SuperFamilySSF541712.68E-22129188IPR016177DNA-binding domain
SMARTSM003802.7E-39129193IPR001471AP2/ERF domain
PfamPF008473.4E-14129179IPR001471AP2/ERF domain
PROSITE profilePS5103223.749129187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-32129188IPR001471AP2/ERF domain
PRINTSPR003675.8E-13130141IPR001471AP2/ERF domain
PRINTSPR003675.8E-13169189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MYQDICLEFD FAXLESIRQH LLDDDFDTTF QESSPTASDS PXPMYXRSLS FSTLFSTESW  60
RDMPFKVELE XTNEVVGALS NGTDGWSSSS DHHHVDVIDT TPVKPEPQXV VREEIVAARE  120
THTPPSRQHF RGVRRRPWGK YAAEIRDPKK NGARVWLGTY ETAEGAALAY DQAAFKMRGS  180
KAKLNFPHLI GSEGYEPVRV TXKRRAPEFS TSSSSSESXS PKPKRRNTGL CLVVEAESGS  240
TSRVEMVEMS QLAAVDQWLS DLNTTVSSMP NELLISGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-30128187160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-30128192468ATERF1
3gcc_A2e-30128192468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.270280.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Weakly expressed in roots. {ECO:0000269|PubMed:10945353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324550.0GU732455.1 Malus x domestica AP2 domain class transcription factor (AP2D31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376227.20.0ethylene-responsive transcription factor 2-like
SwissprotQ9LW501e-50ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A498JI660.0A0A498JI66_MALDO; Uncharacterized protein
STRINGXP_008376227.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-46ethylene-responsive element binding factor 13