PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000132919
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 375aa    MW: 41670.5 Da    PI: 7.9082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000132919genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05134156123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ Cg+ F+ +++L +H+  H
  MDP0000132919 134 FPCTACGEIFPKPETLDHHQAIH 156
                    89******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.201134161IPR007087Zinc finger, C2H2
PROSITE patternPS000280136157IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-14159374No hitNo description
Gene3DG3DSA:3.90.228.101.4E-12161374IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MANISTLFNK FLSLLSSSST SXVSLPPPLP TXPKXPHHRR KISTHLXKPS TLKPQKALST  60
SWSYLKRIFT SKSYKITCTN IIQSHLSTPP RSSHHSIVSL VLPDSDPKYL PGSLPESDIS  120
ADSHQLFPLR NDIFPCTACG EIFPKPETLD HHQAIHHAVS ELHDGDSGKN IVRIIFKTGW  180
TDTRKAPEIH RILKIHNSGK ILSRFEEYRE LVKSKAARNG TVRRRDERCI ADGNELLRFH  240
CSTFVCDLGL NGNSGICNHE YCSVCGIIKS GFSPKLDGIS TLSSSSRAHV AIPEDIEEEF  300
QFMNVKRAML VCRVVAGRVG CDTEEDIDDV DKEGGGFDSV VGREGSGVHT RVDEEELLVF  360
NPRAVLPCFV IVYTV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.226090.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017183172.20.0uncharacterized protein LOC103418759
TrEMBLA0A498K9V90.0A0A498K9V9_MALDO; Uncharacterized protein
STRINGXP_008366236.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-118C2H2 family protein