PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000131978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21503.6 Da PI: 7.7559 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 36.2 | 1.7e-11 | 37 | 81 | 53 | 97 |
DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 + +++++s++yeA+ r+ +P yG+vg++++++++ +q++++++l MDP0000131978 37 HVPAIFKSVLYEACGRIVNPTYGSVGMMWSGSWDQCQAAVDAVLE 81 45889*********************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.8E-6 | 38 | 77 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MSNPGIKPRQ SVHQTCFRTP ADLECSTVRP SRARACHVPA IFKSVLYEAC GRIVNPTYGS 60 VGMMWSGSWD QCQAAVDAVL EGPPITGIDA DALQQNTNPN LDPPHISGDI RYVSTDTNSG 120 CSSRNKARTL EQVEKILQPG QTSIIWHQSA MFPTRMTCTR VRKETGLAEI SKLLMIEMER 180 PELALGLVLP LPTNVN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356758.1 | 5e-49 | PREDICTED: LOB domain-containing protein 42-like | ||||
Swissprot | Q9CA30 | 3e-25 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A498I8Q7 | 1e-99 | A0A498I8Q7_MALDO; Uncharacterized protein | ||||
STRING | XP_008360156.1 | 2e-67 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 1e-27 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000131978 |