PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000131949

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 312aa MW: 35320.3 Da PI: 8.7235

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000131949	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	154	173	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ MDP0000131949 154 FACSICSKTFNRYNNMQMHM 173 78*****************9 PP
2	zf-C2H2	11.5	0.00093	238	260	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k+F k + ++H +++ MDP0000131949 238 FMCRKCAKTFAVKGDWRTHEKNC 260 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.74E-5	145	177	No hit	No description
PROSITE profile	PS50157	10.741	154	181	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.3E-5	154	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.17	154	176	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	156	176	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	201	233	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.9E-5	224	258	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.72E-5	224	258	No hit	No description
SMART	SM00355	78	238	258	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MGLWNHHVED QNLCFQAPPF IEWLKPSSVF SSSSTSSSSS PCLSEHGTIQ CLPLLSQFTD 60 TKPVKVEDRG VQEEGFGVKE EQMEKVTVAL HIGLPNSTNS TGDKSETYDK NKKVLNLKEE 120 QVVMKKSIHG CSFKAESRFW IPTPAQVLVG PMQFACSICS KTFNRYNNMQ MHMWGHGSEY 180 RKGPDSLKGT QPAAMLRLPC YCCAQGCKNN INHPRAKPLK DFRTLQTHYK RKHGAKPFMC 240 RKCAKTFAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD HIRSFGKGHS PHPSLDGFHE 300 DEKECVTGSE EE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008378253.1	0.0	zinc finger protein WIP3-like
Swissprot	Q9SGD1	1e-123	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A498K926	0.0	A0A498K926_MALDO; Uncharacterized protein
STRING	XP_008378253.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-123	WIP domain protein 3

Link Out ? help Back to Top
Phytozome	MDP0000131949

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]