PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000130797 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 27293.3 Da PI: 6.7984 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 147.3 | 8.1e-46 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppG+rF Pt+eelv++yL++k+egk++++ +vi+ +d+y+ ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgyWkatg+ v MDP0000130797 4 LPPGYRFYPTEEELVSFYLHNKLEGKQVDTRRVIPVIDVYSKEPWDLPKfsgeLCNGDREQWFFFTPRQRREAQGGRPNRTTASGYWKATGSPGYV 99 79****************************99****************656754445677************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++++++g+kkt+vfyk +ap+g+kt+W m+ yr+ MDP0000130797 100 YSSDNKVIGVKKTMVFYKDKAPTGRKTKWKMNVYRA 135 ********************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-48 | 3 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.27 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-23 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEELPPGYRF YPTEEELVSF YLHNKLEGKQ VDTRRVIPVI DVYSKEPWDL PKFSGELCNG 60 DREQWFFFTP RQRREAQGGR PNRTTASGYW KATGSPGYVY SSDNKVIGVK KTMVFYKDKA 120 PTGRKTKWKM NVYRAIEVDN STNTSASASA LVHPSLCRVY VVSGSARAFD RRPLEPVEAQ 180 QKFSNSTEAS TSTLKTTMVD KASSSDETYS HSGELGDLPE TSAGINSSNW EINEVDQEKE 240 SL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-36 | 4 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-36 | 4 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-36 | 4 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-36 | 4 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-36 | 4 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-36 | 4 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-36 | 4 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-36 | 4 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-36 | 4 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-36 | 4 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-36 | 4 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-36 | 4 | 167 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-36 | 4 | 167 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-36 | 4 | 167 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017183865.2 | 1e-167 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 9e-78 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A498KBV7 | 1e-162 | A0A498KBV7_MALDO; Uncharacterized protein | ||||
STRING | XP_009377821.1 | 1e-152 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-77 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000130797 |
Publications ? help Back to Top | |||
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