PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000128964
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 267aa    MW: 30027.9 Da    PI: 7.7013
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000128964genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS81.51.5e-2511923236151
           GRAS  36 dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlq 130
                    +p   la+   eAL   ++  ++++++ + ++  +++ ++ e+   +++f++ +P+lkf+h+t NqaIlea++g++ vHiiDf++++ lQWp L+q
  MDP0000128964 119 KPDMALATTHFEALCGFITL-QDSIADXItHTVGSASXSVHENELLYHYFYKXCPYLKFAHFTSNQAILEAFDGHDYVHIIDFNLMHXLQWPVLIQ 213
                    55566888889999999997.77888877466666667799999999************************************************* PP

           GRAS 131 aLasRpegppslRiTgvgspe 151
                      a  p +p +++  g+ +p+
  MDP0000128964 214 XXAXFPVSPTTIK--GIMQPT 232
                    *999888877765..555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF511824.74E-2826143IPR011051RmlC-like cupin domain
Gene3DG3DSA:2.60.120.101.7E-2651138IPR014710RmlC-like jelly roll fold
PfamPF012384.2E-2955145IPR001250Mannose-6-phosphate isomerase, type I
PROSITE profilePS5098515.41956267IPR005202Transcription factor GRAS
PfamPF035145.2E-23119232IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004476Molecular Functionmannose-6-phosphate isomerase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAGIVKPPGA FAVTQHKVSV CILLQIYDWG KXGQDSQNSD ENNGFFPIGS QIISLKDWIS  60
KNPNVXGEKV IQKWGSXLPF LFKVLSVGKA LSIQAHPDKD LAKILHKFMP NVYKEANHKP  120
DMALATTHFE ALCGFITLQD SIADXITHTV GSASXSVHEN ELLYHYFYKX CPYLKFAHFT  180
SNQAILEAFD GHDYVHIIDF NLMHXLQWPV LIQXXAXFPV SPTTIKGIMQ PTVXPDGKRK  240
ELESNMQSAV KWVVYCAYAE KEKVTGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1pmi_A1e-202513813154PHOSPHOMANNOSE ISOMERASE
5nw7_A1e-202513828169Mannose-6-phosphate isomerase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.1571e-72bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0078871e-69DQ007887.1 Malus x domestica DELLA protein (L3a) mRNA, partial cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.17e-20GRAS family protein