PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000124576
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 188aa    MW: 21144.2 Da    PI: 6.8768
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000124576genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS77.32.8e-247515571153
           GRAS  71 eknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg 153
                    + ++ e+   +++f++ +P+lkf+h+t NqaIlea++g++ vHiiDf++++ lQWp L+q +a  p +p +++  g+ +p+ g
  MDP0000124576  75 SXSVHENELLYHYFYKXCPYLKFAHFTSNQAILEAFDGHDYVHIIDFNLMHDLQWPVLIQVIAFFPVSPTTIK--GIMQPTVG 155
                    3457777788999**************************************************9888887765..66666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.1861188IPR005202Transcription factor GRAS
PfamPF035149.8E-2275155IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAGIVKPPGA FAVTQHKVSV CILLQIYDWG KXGQDSQNSD ENNGFFPIGS QIISLKDWIS  60
KNPNVXGEKT VGSASXSVHE NELLYHYFYK XCPYLKFAHF TSNQAILEAF DGHDYVHIID  120
FNLMHDLQWP VLIQVIAFFP VSPTTIKGIM QPTVGPDGKR KELESNMQSA VKWVVYCAYA  180
EKEKVTGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-147415669154GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.1572e-71bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0078871e-68DQ007887.1 Malus x domestica DELLA protein (L3a) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315645.11e-37DELLA protein GAI-like
TrEMBLA0A498HSU02e-36A0A498HSU0_MALDO; Uncharacterized protein
TrEMBLH2EIJ02e-36H2EIJ0_MALDO; Spur-type DELLA protein
TrEMBLQ0HA693e-36Q0HA69_MALDO; DELLA protein (Fragment)
STRINGXP_008337344.15e-37(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-21GRAS family protein