PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000119369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 137aa MW: 15893.7 Da PI: 6.6826 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 2.1e-10 | 33 | 55 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia++++ gRt++++k++w++ MDP0000119369 33 RWSKIAKHLP-GRTDNEIKNYWRT 55 7*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.48E-8 | 31 | 63 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-13 | 32 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.737 | 33 | 57 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.56E-7 | 33 | 55 | No hit | No description |
Pfam | PF00249 | 5.1E-8 | 33 | 55 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MWWWTGLVIY IERHFGEVQP KSIWSNKKPS IQRWSKIAKH LPGRTDNEIK NYWRTRIQKH 60 IKQAENITPG QSSEVNDQAS TSQVSISNTV DTMDISHSAP THQANMDAYP PPLPADQSND 120 NYWSMEDLWS MQLLNGE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028963567.1 | 1e-71 | myb-related protein 305-like isoform X2 | ||||
Swissprot | P81391 | 2e-31 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A498J587 | 5e-69 | A0A498J587_MALDO; Uncharacterized protein | ||||
STRING | XP_008348196.1 | 2e-72 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 3e-28 | myb domain protein 24 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000119369 |
Publications ? help Back to Top | |||
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