PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP20320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 327aa    MW: 37186.1 Da    PI: 8.4814
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP20320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-05214236123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                    + C +Cgk F  + + ++H +++
  GSMUA_AchrUn_randomP20320_001 214 FMCRKCGKAFAVRGDWRTHEKNC 236
                                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-6130149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.48130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494130157IPR007087Zinc finger, C2H2
SuperFamilySSF576671.49E-7130152No hitNo description
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576671.49E-7209234No hitNo description
Gene3DG3DSA:3.30.160.608.9E-6210234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808214234IPR007087Zinc finger, C2H2
SMARTSM0035549214234IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MADSDRYSNL FKGSLNHYGF PSHTSATHSL YAAFTNYTYV QSSPASPPLR EALPLLSLSP  60
TRHGHQQEED SNWLSRGDSV EEEAVSVALH IGLPSPREAD LVSRVSSTSL TRGQYWIPTP  120
SQILIGPTQF PCPVCCKTFN RYNNMQMHMW GHGSQYRKGP ESLKGTQPTG MLRLPCYCCA  180
PGCRSNIDHP RSKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW  240
YCICGSDFKH KRSLKDHIKA FGRGHAPYGL DCFDEEDEPS SEIEQDSDHH HQVKQLDERF  300
IVSDTRINVD AGLLMLSYLM FFVGRTQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387719.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ8W0311e-127ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLM0UAU10.0M0UAU1_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP20320_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-129WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]