PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP19410_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

YABBY

Protein Properties

Length: 154aa MW: 17585.3 Da PI: 10.432

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP19410_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	142	6.4e-44	13	146	24	170
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103 v+vP l+ v v+C +C+sll + ++ q l+ ++ +l++++v ++ l++ +++ + ++++++ + GSMUA_AchrUn_randomP19410_001 13 VNVPRDNLLDSVRVKCECCSSLLCASSGVQFQKLPPQDI--------QLQNHNVGSQGLHMDCGSSSMCANMKTMNSMRS 84 9*********************999999999998885........555666666666665555555555555545433 PP YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ i+P ekrqrvPsaynrfikeei+r+ka+nPdishreafs+aaknWah+P ihf+l GSMUA_AchrUn_randomP19410_001 85 V-QQQML----QIHPAEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSTAAKNWAHLPSIHFKL 146 3.33444....399*************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.6E-46	13	146	IPR006780	YABBY protein
SuperFamily	SSF47095	4.19E-8	93	140	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.4E-6	95	140	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MRNLLEKREN KGVNVPRDNL LDSVRVKCEC CSSLLCASSG VQFQKLPPQD IQLQNHNVGS 60 QGLHMDCGSS SMCANMKTMN SMRSVQQQML QIHPAEKRQR VPSAYNRFIK EEIRRLKATN 120 PDISHREAFS TAAKNWAHLP SIHFKLSLQR NKQL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009387630.1	1e-102	PREDICTED: protein YABBY 2-like isoform X1
Refseq	XP_018677392.1	1e-102	PREDICTED: protein YABBY 2-like isoform X1
Swissprot	Q10FZ7	2e-40	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	M0UAK0	1e-111	M0UAK0_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP19410_001	1e-111	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	7e-38	YABBY family protein