PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP18240_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 318aa MW: 35001.4 Da PI: 8.0782

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP18240_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.2	1.6e-32	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m v+g+t++hvkSHLQkYRl GSMUA_AchrUn_randomP18240_001 45 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMAVPGITIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.858	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-16	44	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-25	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-5	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-22	132	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MYHASKFSTV SMAPDNGQGT EQVGSIGISG GSSVNNPVNP GGSGKQRLRW TSDLHDRFVD 60 AITQLGGPDR ATPKGVLRVM AVPGITIYHV KSHLQKYRLA KYLPDSPADG SKDDKKDSGH 120 THSDTDSAPS AQFNESLKMQ MEVQKRLHEQ LEVQRQLQLR IEAQGRYLQK IIEEQQKLSG 180 VVQKHKSSLS LPISDSNRNP SPLKKPRTAV VNQSSDAAQE TPKQESKPDL CSDHCIISCG 240 FGAGTMLDEG TGSTQQNLPN EVEVGLRFVQ FICTCHATDN FDGDATLVGF LSAISSVPYK 300 VFFCKYQFRQ CFFFFFLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-24	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009387469.2	0.0	PREDICTED: myb family transcription factor PHL7
TrEMBL	M0UA83	0.0	M0UA83_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP18240_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7913	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-47	G2-like family protein