PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP14660_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 24297.5 Da PI: 8.6365 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.7e-19 | 70 | 123 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F+++++++ +++e LA+kl+L rqV vWFqNrRa+ k GSMUA_AchrUn_randomP14660_001 70 KKLRLSKEQSRLLEESFRQHHTLNPKQKEALAMKLKLRPRQVEVWFQNRRARTK 123 67789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.8 | 7.8e-40 | 70 | 157 | 2 | 90 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL+ GSMUA_AchrUn_randomP14660_001 70 KKLRLSKEQSRLLEESFRQHHTLNPKQKEALAMKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQ 149 9******************************************************************************* PP HD-ZIP_I/II 82 keveeLree 90 +eveeLr + GSMUA_AchrUn_randomP14660_001 150 REVEELR-A 157 ******9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-18 | 53 | 126 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.6E-19 | 61 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.86 | 65 | 125 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-16 | 67 | 129 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.07E-16 | 68 | 126 | No hit | No description |
Pfam | PF00046 | 3.5E-16 | 70 | 123 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 100 | 123 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 6.4E-23 | 125 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.7E-10 | 125 | 158 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MGSLERSPSE LDLTIGVPGS SSSSYSPVWS GGGGNMRDLD INQPAYGGEE EYPMGSIEEE 60 EEEGGTPRPK KLRLSKEQSR LLEESFRQHH TLNPKQKEAL AMKLKLRPRQ VEVWFQNRRA 120 RTKLKQTEME CEYLKRCFGS LTEENRRLQR EVEELRALRV APPTVLSPHT RQPVPASSLT 180 MCPRCERVTA APHLAPSSAG GHPFRRPGAL PVAGIADG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 125 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387011.2 | 1e-158 | PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X2 | ||||
Swissprot | Q0JKX1 | 1e-99 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 1e-99 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | M0U975 | 1e-157 | M0U975_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP14660_001 | 1e-157 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6826 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 3e-60 | homeobox-leucine zipper protein 17 |