PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_AchrUn_randomP09790_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 27395.6 Da PI: 11.6383 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 73 | 121 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg+f taeeAa+a+++ +++++g GSMUA_AchrUn_randomP09790_001 73 YRGIRQRP-WGKWAAEIRDPM----KgVRVWLGTFATAEEAARAYDREARRIRG 121 9*******.**********84....35************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.27E-22 | 72 | 130 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.393 | 72 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-32 | 72 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-40 | 72 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.21E-31 | 73 | 130 | No hit | No description |
PRINTS | PR00367 | 8.8E-12 | 73 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-11 | 73 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-12 | 95 | 111 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MCGGAIISDF IPQRNHHRHC PDPDHLLSAS DLWPDSFHPH SVSTQDKGGV LMASSAACFV 60 ISVPRKRGRK NLYRGIRQRP WGKWAAEIRD PMKGVRVWLG TFATAEEAAR AYDREARRIR 120 GKKAKVNFPN EVEPEETDNS VPCNPVRNFI QPKRRRRRRG QQQMMRWSQG MEWRRVIRRS 180 LQAWRCFGSS TTFCRRDGPI RLLDRMVFDT YGFPMLVQWQ ILFRILFSRV GCRI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 73 | 136 | 6 | 70 | ATERF1 |
3gcc_A | 4e-22 | 73 | 136 | 6 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 152 | 157 | KRRRRR |
2 | 152 | 158 | KRRRRRR |
3 | 153 | 158 | RRRRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009386485.1 | 7e-95 | PREDICTED: ethylene-responsive transcription factor ERF071-like | ||||
Swissprot | O22259 | 5e-38 | ERF71_ARATH; Ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | M0U7T9 | 1e-172 | M0U7T9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP09790_001 | 1e-173 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11585 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47520.1 | 2e-30 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|