PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_AchrUn_randomP08350_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 212aa MW: 21570.1 Da PI: 4.7272 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 80.5 | 4.5e-25 | 1 | 52 | 24 | 75 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasecea 75 ++++caar+F+L++eLG+++d++ti+WLlqqa+pai+++tg+++ +as+ a GSMUA_AchrUn_randomP08350_001 1 MPVLCAARVFQLTRELGHKSDGETIQWLLQQAEPAIIAATGSGTVPASALAA 52 9*****************************************9999966622 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 21.334 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-19 | 1 | 56 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MPVLCAARVF QLTRELGHKS DGETIQWLLQ QAEPAIIAAT GSGTVPASAL AAAAAAGGPM 60 SHSSATVLAG LHRKLDEVDQ GAATAVRPIW AMVGAAASSN SNLGAGGSGD GSVGSFMQKM 120 GLLHGMELPS PNIGTMSFAS KFGGYGQQLP GLELGLSQDG HMGVLDPQAL GQFYQQMATE 180 RVGAGADGSG QLQQPQQRPA RQAEDDSQGS ED |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009386304.1 | 1e-115 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 2e-43 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | M0U7E6 | 1e-149 | M0U7E6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP08350_001 | 1e-149 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27010.1 | 6e-37 | TCP family protein |