PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP03500_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 354aa    MW: 37943.1 Da    PI: 8.5965
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP03500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.6e-13113157347
                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    +WT++E+  ++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qky
  GSMUA_AchrUn_randomP03500_001 113 PWTEDEHRMFLMGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKY 157
                                    8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.375106162IPR017930Myb domain
SuperFamilySSF466891.64E-16108163IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-19109161IPR006447Myb domain, plants
SMARTSM007178.3E-11110160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-11110156IPR009057Homeodomain-like
CDDcd001675.86E-9113158No hitNo description
PfamPF002491.4E-10113157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPA RGGGVRLFGV RLAEGVAAMK KSASMGCLPS SSTSAAACAA  60
SSSPAAGAAA SPCGDPLVDH HHSASAASGY ASDDPARASC SSNCRSERKK GVPWTEDEHR  120
MFLMGLQKLG KGDWRGIARN FVVSRTPTQV ASHAQKYFIR QSNASRRKRR SSLFDMVPEM  180
PIDHGPPHEE QLLPNSPIEV ETTNKLPALH LGLQGPKPIE PSTTEHVVEP RESIPHENHP  240
VMMLPMFYPT FIPVPVPFLP SDLAATAKDD TMGEAHEVVK PTPVVRKEPV NMDEVISMSK  300
LRIGEGVARS IEPSALSFKL LGSSSASRQS AFHINPSIAM PDLNQSSGSP IHAV
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385776.10.0PREDICTED: transcription factor MYB1R1-like
SwissprotQ7XC572e-93MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLM0U6120.0M0U612_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP03500_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-73MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]