PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP03390_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 250aa MW: 26527.5 Da PI: 7.1856 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.3 | 1.1e-30 | 68 | 122 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY+eClkNhA+++GghavDGC Ef+++ gee t +al+CaAC CHRnFHRre+e GSMUA_AchrUn_randomP03390_001 68 GVRYRECLKNHAVAIGGHAVDGCSEFLAA-GEEDTLDALRCAACSCHRNFHRREEE 122 589*************************9.8888*******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.8E-28 | 69 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.4E-27 | 70 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.856 | 71 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-19 | 71 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.2E-19 | 178 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-31 | 179 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.7E-25 | 187 | 244 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDFEDHDEAD EEMGLLAISG YDNPMPNSAR GGAGGGGDKM GGSAGGAEEA AVSGSGKRKV 60 GGDGGGWGVR YRECLKNHAV AIGGHAVDGC SEFLAAGEED TLDALRCAAC SCHRNFHRRE 120 EEGGGGAAVL ETVGCYHRFS PFYRTPAGYL HHRHHMVVAA DSNPMMGAGG LVGVGGATGT 180 SGSGGHRKRS RTKFTQEQKE KMLAFAERVG WRIQKHDEAA VQQFCGETCV DRHVLKVWMH 240 NNKQTLGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-26 | 188 | 245 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM476712 | 9e-46 | AM476712.2 Vitis vinifera contig VV78X131483.10, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385760.1 | 1e-146 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q6YXH5 | 3e-77 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | M0U601 | 0.0 | M0U601_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP03390_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-61 | homeobox protein 22 |
Publications ? help Back to Top | |||
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