PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP03000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 601aa    MW: 66708.8 Da    PI: 6.7349
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP03000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-1672116147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    r +WT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  GSMUA_AchrUn_randomP03000_001  72 REKWTEEEHNRFLEALKLYGRS-WQRIEEHIG-TKTAVQIRSHAQKF 116
                                    789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1666122IPR009057Homeodomain-like
PROSITE profilePS5129420.83867121IPR017930Myb domain
TIGRFAMsTIGR015571.4E-1670119IPR006447Myb domain, plants
SMARTSM007174.6E-1371119IPR001005SANT/Myb domain
PfamPF002497.0E-1472115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-972112IPR009057Homeodomain-like
CDDcd001675.30E-1074117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010243Biological Processresponse to organonitrogen compound
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MRYFLDQVER LVGYMEGGWM IHVADFKSKC PRLLSTPPFS ASEVSDLEME EKSCGENMVA  60
KVRKPYTITK QREKWTEEEH NRFLEALKLY GRSWQRIEEH IGTKTAVQIR SHAQKFFTKL  120
EKEALIKGVS PGQVHDIDIP PPRPKRKPSN PYPRKMSTGV PSPSPSAEAT DDKPPTPSSL  180
QPTNQHSFRL ESDAATERLA AMETVAAKEN FEDGNRSEVI DINQDVPSAS FFTEFIPTSE  240
ASKKEKITVD KSLLLSEVNE EAVRGHLQHQ LPWFSPLTQC QSNQDACDSF LNISSTFSTL  300
IISTLLQNPS VHAAACLAAS VWPSPEVDTS LHSSPPVHMK PSPTMTPVVA ATVGAATAWW  360
AAQGALPWFP HFTFAFTSAP PTRAQPVEMV QEPERRHDAS FQVKASEINN SPPLLAGGVN  420
DLRSKRKQHL SCGSNDTANN ETVDKEAEEA FTNTSAPEIN HRRLRSSAST DEPWKESEKL  480
AYEAPLKRDL PRSSSPLHAK DAQTKVRSDR DSSMLPANLS ENAGLETDLL HPHCLKKEEM  540
SKEINGSTGQ SSVTNDFRHG NSMSSRTGFK PYKRCSVEAK ESKAVSGEET GNKKIRLPEE  600
A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00103PBMTransfer from AT2G46830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385738.10.0PREDICTED: protein LHY-like isoform X8
TrEMBLM0U5W20.0M0U5W2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP03000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.31e-40MYB_related family protein