PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP00900_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 227aa MW: 23883.5 Da PI: 6.6336 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.5 | 2.3e-38 | 66 | 197 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaessss 80 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLlqqa+pai+++tgt++++as+ +a++ GSMUA_AchrUn_randomP00900_001 66 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGYKSDGETIRWLLQQAEPAIIAATGTGTIPASALaSAAAAGP 145 789*************************************************************9999966622111111 PP TCP 81 sasnsssg................................................k 89 ++ + + GSMUA_AchrUn_randomP00900_001 146 TG-----PmsfasllaghgqqlpglelglsqdahsgalnpqalnqfysqighvmgaA 197 11.....12222333444433444444444444444445555555555555555551 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-31 | 71 | 195 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.938 | 72 | 126 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDPKDSSKQP QYVSRLPQER SLPLSHETDA AAAAESSDLV PAAASERHGG LQVVAAEKDE 60 QRKQLAPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGYKSDGE TIRWLLQQAE 120 PAIIAATGTG TIPASALASA AAAGPTGPMS FASLLAGHGQ QLPGLELGLS QDAHSGALNP 180 QALNQFYSQI GHVMGAAGSA GSAGSGQLQH QQQQQVFSAE DDSQESE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385477.1 | 1e-86 | PREDICTED: transcription factor TCP20-like | ||||
Refseq | XP_009385479.1 | 1e-86 | PREDICTED: transcription factor TCP20-like | ||||
Refseq | XP_018676704.1 | 1e-86 | PREDICTED: transcription factor TCP20-like | ||||
Refseq | XP_018676705.1 | 1e-86 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 5e-44 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | M0U5A2 | 1e-161 | M0U5A2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP00900_001 | 1e-162 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 7e-43 | TCP family protein |