PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP00040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 275aa    MW: 31008.7 Da    PI: 7.0267
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP00040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.1e-181461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g W++eEde+lv+ ++++G g+W+++++  g+ R++k+c++rw +yl
  GSMUA_AchrUn_randomP00040_001 14 KGLWSPEEDEKLVKHITEHGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                                   678*******************************************97 PP
2Myb_DNA-binding452.5e-1467110146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    rg ++++E+ l++++++ lG++ W+ Ia++++ gRt++++k+ w++
  GSMUA_AchrUn_randomP00040_001  67 RGTFSEQEESLIIELHAVLGNR-WSQIAARLP-GRTDNEIKNSWNS 110
                                    899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-28664IPR009057Homeodomain-like
PROSITE profilePS5129425.113965IPR017930Myb domain
SuperFamilySSF466896.36E-2912108IPR009057Homeodomain-like
SMARTSM007173.7E-131363IPR001005SANT/Myb domain
PfamPF002496.8E-161461IPR001005SANT/Myb domain
CDDcd001677.26E-121761No hitNo description
Gene3DG3DSA:1.10.10.605.0E-2565116IPR009057Homeodomain-like
SMARTSM007178.3E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129419.5166116IPR017930Myb domain
PfamPF002492.1E-1367110IPR001005SANT/Myb domain
CDDcd001678.11E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRHSCCYKQ KVRKGLWSPE EDEKLVKHIT EHGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SEQEESLIIE LHAVLGNRWS QIAARLPGRT DNEIKNSWNS CIKKKLRQRG  120
IDPNSHQPLG DFKMPTPTPE NVNRAVAENS MASTCLSDPM AVFSLAQLSF RPDDSPHCST  180
VIDSSRSSMS KANGVELQSS CSFDGGILPW SELAPDTDAQ LHLEGESEDL KWSEYLQGVF  240
PTPSASQTQT QQFGAWHQNQ NQQQFLLSDI HDKDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385424.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ8VZQ24e-82MYB61_ARATH; Transcription factor MYB61
TrEMBLM0U5160.0M0U516_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP00040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.19e-84myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]