PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P27800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 398aa    MW: 45496.4 Da    PI: 7.1839
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P27800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-087090526
                           --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                            C f+++ G C yG+rC+++H+
  GSMUA_Achr9P27800_001 70 ACTFYQK-GLCIYGSRCRYSHV 90
                           6******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.5683764IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-43863IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-63962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-56589IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3426592IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-46791IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-57090IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.83E-14179256No hitNo description
Gene3DG3DSA:3.30.40.106.0E-11183252IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001622.29E-4191252No hitNo description
SMARTSM001849.0E-8192249IPR001841Zinc finger, RING-type
PfamPF000972.6E-7192249IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.017192250IPR001841Zinc finger, RING-type
PROSITE patternPS005180216225IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.629279308IPR000571Zinc finger, CCCH-type
SMARTSM003560.0079279307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MWNRCFPMVG IISPSQSTNI RHLNMPFLYD FFRHLLSQPR VLCKYFAHGT CLKAEYCEFS  60
HDWRDRSNKA CTFYQKGLCI YGSRCRYSHV GDSCHETSDP ASSISHHASS SSQVACPFRA  120
SLSRETTQAF RIPLNLPASS QSHIRPCEHA QTQKTCSICE PLSSGKREEH SMIGQKKNKL  180
LETLKYSQEI ECSICLEIVL FKPTDAERKF GMLSECDHPF CISCIRNWRR NSPASGIDLN  240
TALRACPVCR KHSYFVVPSV TWFSTKEEKQ EIIDTYKNKL KSIDCKYYDF GNGTCPFGTS  300
CFYKHIYKPS TNRRNTCRPH RYRPHPHRHG QVMEGAELED VVNQLVMGNE LANLAALLDI  360
NEGESEDLDD ADLGSLLASF LLMQMDDEDS QSDDDNYP
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419185.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1
SwissprotQ5ZA077e-99C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLM0U4370.0M0U437_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P27800_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-90C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]