PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P27630_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB_related

Protein Properties

Length: 424aa MW: 46551.8 Da PI: 10.1672

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P27630_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.1	1.3e-10	7	39	4	37
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtl 37 W t+E++ll++av+++G+++W+++a +++ Rt GSMUA_Achr9P27630_001 7 WGTWEELLLACAVNRHGTRRWESVAMEIQ-SRTS 39 *****************************.6665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.353	1	57	IPR017877	Myb-like domain
SMART	SM00717	2.8E-5	3	59	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.18E-6	4	59	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.9E-5	5	56	IPR009057	Homeodomain-like
CDD	cd00167	1.39E-7	7	56	No hit	No description
Pfam	PF00249	3.5E-9	7	40	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MEEKEIWGTW EELLLACAVN RHGTRRWESV AMEIQSRTSV SQLVTPQGCR QRYRDLQRRF 60 GVGVVNGSGD DDGGDADPDS KADVPWLEEL RRLRVTELRR EVERYDMSIG SLQLKVKSLQ 120 EERERSLRQA ESGEEKPDHE TKKEAGPLGS TPESLAGNRI SSGGDSGKAS ASVPPGSDAT 180 DPSAVADEKA AEGSYNGSTG SPTVGAAARK QAMGDSGESI AESKRGEEGE GGEKESSDVQ 240 SSASLSRRRR KAAFIGRSGG GEEAAAESQP LVDLLQIFRS DKYGSVFERR LESQVSVRYR 300 SLVRQHVDLE MELDATFRTP KEPTPPPPPQ PKPAAPKPNP EPDLAGARRR RRSLILRERS 360 RTTRRRASLP RKGPSFLGRR EGCGAAKSGV AKGKEVRQPK GPTLLPLRAS NPNPWTTWRP 420 SRRW

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MEEKEIWGTW EELLLACAVN RHGTRRWESV AMEIQSRTSV SQLVTPQGCR QRYRDLQRRF  60
GVGVVNGSGD DDGGDADPDS KADVPWLEEL RRLRVTELRR EVERYDMSIG SLQLKVKSLQ  120
EERERSLRQA ESGEEKPDHE TKKEAGPLGS TPESLAGNRI SSGGDSGKAS ASVPPGSDAT  180
DPSAVADEKA AEGSYNGSTG SPTVGAAARK QAMGDSGESI AESKRGEEGE GGEKESSDVQ  240
SSASLSRRRR KAAFIGRSGG GEEAAAESQP LVDLLQIFRS DKYGSVFERR LESQVSVRYR  300
SLVRQHVDLE MELDATFRTP KEPTPPPPPQ PKPAAPKPNP EPDLAGARRR RRSLILRERS  360
RTTRRRASLP RKGPSFLGRR EGCGAAKSGV AKGKEVRQPK GPTLLPLRAS NPNPWTTWRP  420
SRRW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419164.1	1e-179	PREDICTED: nucleolar and coiled-body phosphoprotein 1-like
TrEMBL	M0U420	0.0	M0U420_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P27630_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3181	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	3e-22	DNA-binding bromodomain-containing protein