PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P26300_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 258aa MW: 29150.8 Da PI: 8.1677 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.3e-19 | 121 | 174 | 2 | 55 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 rk+ ++tkeq Le+ F++++ ++ ++++ LAk+l+L rqV vWFqNrRa++ GSMUA_Achr9P26300_001 121 RKKLRLTKEQSSLLEDKFKEHSSLNPKQKQALAKQLNLRPRQVEVWFQNRRARW 174 788899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 110.8 | 9e-36 | 121 | 210 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt.ktkqlEkdyeaLkraydalkeenerLekeveeL 87 +kk+rl+keq++lLE++F+e++ L+p++K++la++L+l+prqv+vWFqnrRAR+ k+k++E++ e+L+r++++l+ee++rL+ke ++L GSMUA_Achr9P26300_001 121 RKKLRLTKEQSSLLEDKFKEHSSLNPKQKQALAKQLNLRPRQVEVWFQNRRARWtKLKKTEVELEFLRRCCETLTEEKRRLQKELQDL 208 69***************************************************8799******************************9 PP HD-ZIP_I/II 88 re 89 ++ GSMUA_Achr9P26300_001 209 EN 210 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-18 | 117 | 178 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 117 | 177 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-16 | 119 | 181 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.8E-16 | 121 | 174 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.03E-16 | 121 | 178 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 126 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00340 | 9.9E-12 | 178 | 222 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAMDDHDRDD TPHTGLSLTL SYDGRSDLSI GSRPHSSSGL ELQRSSSTPK ALEPSLTLAL 60 PGDVCASVEV EMGRDIGSRH SPPPQSHHPC KIKREDDVRS EEVEKVSSRI SDEEEEDSGA 120 RKKLRLTKEQ SSLLEDKFKE HSSLNPKQKQ ALAKQLNLRP RQVEVWFQNR RARWTKLKKT 180 EVELEFLRRC CETLTEEKRR LQKELQDLEN SHKLSATRHM QIPAMCPSCK KVIGGAETGS 240 PLPASTPRFF NPFAHHAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009419027.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 5e-59 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | M0U3N7 | 0.0 | M0U3N7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P26300_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-54 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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