PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P25450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 258aa    MW: 27999.2 Da    PI: 6.0168
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P25450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.12e-40101091100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            aCaaCk++rr+C++dC+la yfpa+qpk+f+n h+lFG+sn+lk++++l++ ++ +am+s++yeA++r rdPv+G++gvi +l+ q++
  GSMUA_Achr9P25450_001  10 ACAACKYQRRRCPSDCPLAAYFPADQPKQFQNCHRLFGVSNILKIINRLDPPQKAEAMKSIIYEANIRDRDPVHGCLGVICTLHLQIQ 97 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            +l+ el+++ ++
  GSMUA_Achr9P25450_001  98 HLQLELDTATAQ 109
                            ******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.4639110IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3910106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTVKGGTNNA CAACKYQRRR CPSDCPLAAY FPADQPKQFQ NCHRLFGVSN ILKIINRLDP  60
PQKAEAMKSI IYEANIRDRD PVHGCLGVIC TLHLQIQHLQ LELDTATAQL ALYRHHHHQS  120
LQLASPLSSG SSPITGTAAN CLLFDNGISI VESCSRADNS DINTVGPFWA HNSHANNDST  180
GNSIVAVTAA GLHAPFAGVI EHDYDDIAPY FDTIDEDGAY ESSSESSLKD TMQSTMEHVS  240
QNELKSAAAC FTLTNAVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3161137114LOB family transfactor Ramosa2.1
5ly0_B2e-3161137114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018673497.11e-120PREDICTED: LOB domain-containing protein 27-like
TrEMBLM0U3F20.0M0U3F2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P25450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.17e-47LOB domain-containing protein 27