PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P23870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 434aa    MW: 47346.1 Da    PI: 9.9823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P23870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-055779123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           + C+ C+k F r  nL+ H r H
  GSMUA_Achr9P23870_001 57 FICEVCNKGFQREQNLQLHRRGH 79
                           89*******************88 PP
2zf-C2H2130.00031134156123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k++  +s+ k H +t+
  GSMUA_Achr9P23870_001 134 WKCDKCSKRYAVQSDWKAHSKTC 156
                            58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121711.5E-55679IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.51E-75779No hitNo description
PROSITE profilePS5015710.995779IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-55779IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035516099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-5122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-7129154No hitNo description
SMARTSM00355140134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAAASSSVPF LGFREEDQSN TQHPQQKQQS SSSSAAAARP ASPQKKKRTL PGNPSKFICE  60
VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP KDVVRRRVYT CPEPSCVHHD PSRALGDLTG  120
IKKHYCRKHG EKKWKCDKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA  180
FCDALAQESA RIPAAMSIGS HLYGDNGINL DLPQVNSQLS SLQDQIRLGG GATQFDHLTM  240
PSFRPPPSAS SFYLGGGSGH QDFNESTHGL LQLKICRFMP APHLPPKESI PPHMSATALL  300
QKAAQMGATS SRGTASSLLR GLGRSFDGVR ESSASQQEDE TQFQGLMSSL ATGNSTGSFG  360
GGGNESKLQG YPSATGRGAS DRLTRDFLGV GSMMRNMGRG IARREQHSGM DIDELDSEMK  420
SGSSTPSFVG GNLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35130194367Zinc finger protein JACKDAW
5b3h_F3e-35130194367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1011811e-129AK101181.1 Oryza sativa Japonica Group cDNA clone:J033029F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020705077.11e-145protein indeterminate-domain 5, chloroplastic
RefseqXP_020705079.11e-145protein indeterminate-domain 5, chloroplastic
RefseqXP_020705080.11e-145protein indeterminate-domain 5, chloroplastic
SwissprotQ8GYC17e-99IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLM0U2Z40.0M0U2Z4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P23870_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.15e-93indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]