PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P22780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 344aa    MW: 38509.4 Da    PI: 7.9446
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P22780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.6e-1565152187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                            +W++  v++L+e++++++   +r+klk+ +Wee++ ++    +  +  ++p+qCk+k+e ++kry+ + +        s s ++++ +
  GSMUA_Achr9P22780_001  65 EWSEGGVRCLLEVYESKWVLRNRAKLKGSDWEEIAHHVsvrcSGPKALKTPTQCKNKIEAMKKRYRSESAAHDP---SSGSPWQFYAS 149
                            5***********************************9988544445568******************9998886...34456*****9 PP

               trihelix  85 lea 87 
                            ++a
  GSMUA_Achr9P22780_001 150 MDA 152
                            985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.3E-2063153No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MILLLIYYTY RRSPSNLIQS DPLFRTFRGS NSLLRVPMDG AHPPTCRDLA PAPALKSPDK  60
GKRDEWSEGG VRCLLEVYES KWVLRNRAKL KGSDWEEIAH HVSVRCSGPK ALKTPTQCKN  120
KIEAMKKRYR SESAAHDPSS GSPWQFYASM DALLKGTGNC AAHPKPNHDA DLPPLPKAEM  180
EVEADGHLHD SNHDDGSNTV PMDININGDN NNETKMENRG TDSHLSAPRS KEAASDDGAR  240
DPNSSSKRRR ILGSEVAESI RLLAQSMLQV ERARLEMYKD SERMRAEAEI KRGEMELKRT  300
EIIAKTQLQI AKLFIEGMRR SSKSSNPSSR TELDMLPEMD GEGD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246250KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418542.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLM0U2N70.0M0U2N7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P22780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-63sequence-specific DNA binding transcription factors