PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P20700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 1023aa    MW: 114570 Da    PI: 9.2424
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P20700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.2e-16129162134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            C +C   kTp+WR gp g+ktLCnaCG++y++ +
  GSMUA_Achr9P20700_001 129 CMHCEIQKTPQWRAGPMGPKTLCNACGVRYKSGR 162
                            99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.897123159IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-15123173IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-13127186No hitNo description
Gene3DG3DSA:3.30.50.109.0E-14127160IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.74E-13128185No hitNo description
PfamPF003204.3E-14129162IPR000679Zinc finger, GATA-type
PROSITE patternPS003440129154IPR000679Zinc finger, GATA-type
SuperFamilySSF534481.97E-8688880IPR029044Nucleotide-diphospho-sugar transferases
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1023 aa     Download sequence    Send to blast
MSKFLDDSDS FSLDLPSCDG INNNANGEDN GVQTKARGHH SFFRTSSPVS VLEADTMGGG  60
GGGDSYSSSS SSSSTSASYS NRGNDATIPL PPLSPPEPPS KKKSKKKSPA TAATADGEES  120
GPPPPVRKCM HCEIQKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPSIH  180
SNSHKKVVEM RINASQKCAT EGAATSSSSD GCDLLEYIRR REGLLRGPNT RSGDLLEGML  240
NDYVAGKSSA KMRAPKIASS SLVATLTCLQ FAFAMYATFL LYYMSPSVDL RSKADFSWAT  300
RIAQHWKQFI GHPHVMSSIQ DIPAVVDSPA AVCEFEQIDF SQKKSDDALM IKLKRELYDE  360
VLAFQKANSG TESLAELTRM KSKWSRVGPN IPKITVILNH FKRKTLCAQL DSIGRILPFR  420
QKDFTFPSYR KFLSKEAGLY LPDPAYDITV ERIVQVDFLS SSWFLSADLV KTLFVETPFT  480
FMTGEDLHLS YQLRKYRDAG SYVLPIDPSD KDTWGDSEHR LAYVSETTVI FKDVVRVRDD  540
QWWRALSAGY VTQWAAMYPQ KIDALFYAHS VGEVRALAPL LEKFRTTVGR KAYIVVSGGS  600
FCSCQEAVTV LRWPENAVYS SLKGLLKIHN PSLLIAVDDV DQKVKNALKM AAEGTANVTA  660
LVLLPRADVP KVLWMADLRP IALPSWNRMR ITVNVITQNR ATSLRRLLGS LQNAYYLGDE  720
VRLSFNMDSK VDQETLKVVG SFRWAQGPKF IRRRIIHGGL IRAVSESWYP SDDDDFGLLL  780
EDDIEVSPYY YVWIKYALLS YHYDPQVSLP ELASISLYTP RLVEVVKERP KWNATEFFKK  840
IHPNTPYLHQ LPCSWGAVFF PKHWREFYAY MNARFTEDAK QNPVQIPKSR TNGWQASWKK  900
FLIDMMYLRG YVSLYPNFPN QASFSTNHME PGAHISAKDN VVKHNKEDFE VPLMKAEFTK  960
LLPAGKLPPA NKLPVLNLFN QAVSLKALKA AGAKLRQDLI SCDEAEIVTV DHSTGLPRNC  1020
TRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018686952.10.0PREDICTED: uncharacterized protein LOC103998566 isoform X1
TrEMBLM0U2290.0M0U229_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P20700_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-38GATA family protein