PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P20400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 600aa    MW: 65744.7 Da    PI: 4.4773
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P20400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.66.8e-122564141
                    NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk 41
                           l+pGfrFhPtdeelv++yLk+kv g++l+  ++++evd+y+
  GSMUA_Achr9P20400_001 25 LAPGFRFHPTDEELVSYYLKRKVCGRPLRN-DAVAEVDLYS 64
                           579************************999.89*****985 PP
2NAM81.41.9e-256312961128
                    NAM  61 FskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +s+ d+ky++ +r+nrat +gyWk+tgkd++v++ + ++vg+kktLv++ grap+g++t+Wvmheyrl
  GSMUA_Achr9P20400_001  63 YSPLDRKYSNRSRTNRATPQGYWKTTGKDRPVCR-GPRVVGMKKTLVYHAGRAPHGTRTNWVMHEYRL 129
                            78899****************************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-4820152IPR003441NAC domain
PROSITE profilePS5100532.0225152IPR003441NAC domain
PfamPF023654.3E-2327129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MPRRSLNAGN AASSDQLPPA AASSLAPGFR FHPTDEELVS YYLKRKVCGR PLRNDAVAEV  60
DLYSPLDRKY SNRSRTNRAT PQGYWKTTGK DRPVCRGPRV VGMKKTLVYH AGRAPHGTRT  120
NWVMHEYRLK DEELTQAGIS QNAFVVCRIF QKSGAGPQNG AQYGAPFLEE EWEVEADDAV  180
VLMPDGGEDD EVNEAAEQEY LHFGDFVKNV DLENQHVNAS NLVADLDEDY GGLTEDATIL  240
LDETVDDTSF TNMVECIDEP GQQISQTPTD DMEKETLMEE HTHNHSPPNE KDEYVELNDL  300
TDSANATFPL SEESTQDNFY VQPNDLSPVP GGCPSSQQLQ ENMVFCDAPS DNLAFEHEKD  360
QFTHSPVHDT SGFEMIDDLL AYFDATNDKL YYDTIGFPGC SECTSSSDKS NFPGEVCDGN  420
CSTSKAPAQV PDTHIVGGAS SSASSVACNA HMKDGNDKTI SKCLVNMLGS IPAPPAFAAE  480
YPAGAAKSMA QTSAVHPASS IHVTTGFVYI CDPTVSGSVG HWSLQKNGHA SFILSYRMAD  540
NVSRKTSDFV PSKNQVDAVS VVLRGGLYVL FLLPLFLTIS YKVGITICGR SWFNNTWHYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-362115211168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418258.10.0PREDICTED: NAC domain-containing protein 53-like
TrEMBLM0U1Z90.0M0U1Z9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P20400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.19e-66NAC domain containing protein 2