PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P20120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 645aa    MW: 69362.3 Da    PI: 9.9004
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P20120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-101045137
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                           r  W t+E++ll++av+++G+++W++++ +++  Rt 
  GSMUA_Achr9P20120_001 10 REVWGTWEELLLACAVNRHGTRRWDSVSMEIQ-SRTT 45
                           678*****************************.8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.133563IPR017877Myb-like domain
SMARTSM007174.3E-5965IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-51065IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-41046IPR009057Homeodomain-like
PfamPF002492.4E-91046IPR001005SANT/Myb domain
CDDcd001672.38E-61362No hitNo description
SMARTSM002971.1E-9282393IPR001487Bromodomain
SuperFamilySSF473703.27E-13291404IPR001487Bromodomain
Gene3DG3DSA:1.20.920.107.6E-12292415IPR001487Bromodomain
CDDcd043694.92E-13293388No hitNo description
PROSITE profilePS500149.021301374IPR001487Bromodomain
PfamPF004391.2E-7302377IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MARSGDPDER EVWGTWEELL LACAVNRHGT RRWDSVSMEI QSRTTASHHV TPQGCRQRFR  60
DLQRRFGAGG DNDGSDADPD PPADVPWLEE LRKLRVAELR RELERCDLSI GSLQLKVKRL  120
QEDRERSLQD GESGEGKPDR DAKEEGGSPK STPGSLAGDP ISSGGASGPS CEQSNSTDPK  180
QKSGEDLWET EKEAADPSTG GNEKMDEGSY NGSTGSPAAE AAARSHAMGE SGESIAESKG  240
GGGEGEESSD VQSSASLSRR RRKKVMPDGG GEEPEAEDAS ILNKRAAAES LPLVSLLQII  300
RSDKYGSVFE RRLESQDCVG YRSLIRHHVD LEMVRAKLDR VESGCSYATV EFARDMLLLC  360
TNAVVFYAKG SPEAVAAFSL RRLLVKEMAS VFRRPKEPTL PPPPPPAPQS EPTASKPKLE  420
PDLAVALVEK PMSPTPSIVC RKRSSISNKP AVAVVKEERD EKADPGRKEL DNEEKSLQTK  480
TTNEKTGPTG TTRGLRTNKV RGGNGGGGPP AKKPNLAPAP TLKSKSLENQ SATSFLNRMK  540
RSSNGKLMEM LKTSSSSGGG NAKGMEQKDA KGDDRKDQRP RRGTGGRGGP RKRAAETSGG  600
SAKRSVGRPP KRAAAPPPPP AKRAREAAEA TSRTSASAPR KRGRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418232.10.0PREDICTED: uncharacterized protein LOC103998475
TrEMBLM0U1X10.0M0U1X1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P20120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-22DNA-binding bromodomain-containing protein