PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P18800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 577aa    MW: 63461.2 Da    PI: 9.9051
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P18800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.91.8e-3074158187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW +qe+laL+++r+em+ ++r++  k+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+ql+a
  GSMUA_Achr9P18800_001  74 RWLRQETLALLKIRSEMDASFRDATFKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRHDGKS--YRFFSQLDA 158
                            8*********************************************************************866666..******985 PP
2trihelix1002e-31354440187
               trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW++ ev+aLi++r+ +e+++++ g +  +lWee+s+ m++ g+ rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a
  GSMUA_Achr9P18800_001 354 RWPRAEVHALINLRTGLESKYQEaGTKGTTLWEEISAGMQRLGYIRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 440
                            8*********************83567799*****************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00471133IPR001005SANT/Myb domain
CDDcd122038.08E-2873138No hitNo description
PROSITE profilePS500906.74873131IPR017877Myb-like domain
PfamPF138372.9E-2173159No hitNo description
PROSITE profilePS500906.69347412IPR017877Myb-like domain
SMARTSM0071721351414IPR001005SANT/Myb domain
CDDcd122036.12E-29353419No hitNo description
PfamPF138373.5E-23353441No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MVPFSPSAVD SGGHLLGPPG PDPVLQPPLA ASASPSCSRS LPRRIVDFEE LAPAVVGNFP  60
DEDADKSGGT TGNRWLRQET LALLKIRSEM DASFRDATFK GPLWEEVSRK LAELGYKRSA  120
KKCKEKFENV HKYYKRTKEG RAGRHDGKSY RFFSQLDALY ISRAQPISAV APPTMAMPTR  180
AVVPDLTLPG GPQGVSSSGA AAATGLTFSS SSFSSSSSSE GSGTSRKMMA FFDRLMKQVM  240
ERQDAMQQRF LEAIEKREQD RTIREEAWRR QEMGRLNREQ ELLVQERALA ASRDNATISY  300
LQKINSHTIS TPTMPSNAPL PPQQPSPTLP RPPQQQHEVR QHHQTSEVPV SSSRWPRAEV  360
HALINLRTGL ESKYQEAGTK GTTLWEEISA GMQRLGYIRS AKRCKEKWEN INKYFKKVKE  420
SNKKRPEDAK TCPYFHQLDA LYRKKLLGSG IAGVGNSSGT GNTVGIQRQQ GRETDRASNQ  480
QQSDAPTILP RQQAPRPPSP QQLTAEAESK NENGTSNQNS GNSESDGDSV GITSNGGLPP  540
SLFDEGMKKV TTGPSNLSND LCIFATISSR SDGLMLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418089.20.0PREDICTED: trihelix transcription factor GTL1-like
SwissprotQ391176e-97TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLM0U1I70.0M0U1I7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P18800_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-70Trihelix family protein