PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P15550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 429aa    MW: 47371.7 Da    PI: 8.4725
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P15550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.41e-10141171434
                            XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                             k  rr+++NReAAr+sR+RKka++++Le+ 
  GSMUA_Achr9P15550_001 141 QKTLRRLAQNREAARKSRLRKKAYVQQLENS 171
                            5889*************************74 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-4138198IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.944140184IPR004827Basic-leucine zipper domain
PfamPF001702.9E-8141176IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-6142183No hitNo description
CDDcd147088.11E-21142194No hitNo description
Gene3DG3DSA:1.20.5.1704.8E-8144175No hitNo description
PROSITE patternPS000360145160IPR004827Basic-leucine zipper domain
PfamPF141443.8E-29227301IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MYSSHLYRGE QAPSGFNIGD AVLDLTRSPI LSPKSSSNLT AVNSSPLHLH FGAINHASMA  60
SLDVAAPTAA AATHVDAGRM AFSRGQIENW GDSAMVVSSP RTDTSTDVEI EDRTKMFGGV  120
QQGAIICADS SAMSKGKAGE QKTLRRLAQN REAARKSRLR KKAYVQQLEN SRVKLIQLEQ  180
VLQRARQQGI LIASGFMGDH SYSIGGNGAL AFDLEYARWL EDHQRRINDL RSALNSQVND  240
DELRLTVETF MGHYDEVFRL KSIGIKSDVF HILSGMWTTP AERCFMWLGG FRSSELLKIL  300
VSHLEPLTDQ QLMGLCNLQH SSQQAEDALS QGMEALQQSL SETLASASLV PAGGADNVSN  360
YMGQMTIAMG KLSTLENFLR QADLLRQQTL QQMHRILTTR QAARALLTIS DYFSRLRALS  420
SLWLARPRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417650.10.0PREDICTED: transcription factor TGA2.3-like
SwissprotQ5Z6N91e-176TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLM0U0L30.0M0U0L3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P15550_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-140bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]