PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P14090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 910aa    MW: 101291 Da    PI: 6.4688
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P14090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3696.5e-22134235199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+
  GSMUA_Achr9P14090_001 134 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfsM-QPPA-QELQARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVL 219
                            99*****************************954.4444.49********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++++l+++++r+
  GSMUA_Achr9P14090_001 220 FI--RDKKQQLLLGIRRA 235
                            **..5578889****997 PP
2Auxin_resp1219e-40260343183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+v+YnPras+seFv++++k++ka++ ++vs+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  GSMUA_Achr9P14090_001 260 AAHAAANHSPFTVFYNPRASPSEFVIPFAKYQKAVYsNQVSLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343
                            79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-43124263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-40127248IPR015300DNA-binding pseudobarrel domain
CDDcd100177.25E-18133225No hitNo description
PfamPF023625.1E-20134235IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533134236IPR003340B3 DNA binding domain
SMARTSM010191.2E-20134236IPR003340B3 DNA binding domain
PfamPF065071.1E-34260343IPR010525Auxin response factor
PfamPF023094.9E-9766862IPR033389AUX/IAA domain
PROSITE profilePS5174527.911777861IPR000270PB1 domain
SuperFamilySSF542772.16E-7781855No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MKADASGAAA PSPCEGERKT INPELWYACA GPLVTVPPVG SLVVYFPQGH SEQMVEPNFV  60
AASMQKDINA HIPNYPNLPS KLICLLHNVT LHADPETDEV YAQMTLQPVN SYDKEALQAS  120
ELALKQTRPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFSMQPP AQELQARDLH  180
DNLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDKKQQLLL GIRRANRQPT  240
NLSSSVLSTD SMHIGILAAA AHAAANHSPF TVFYNPRASP SEFVIPFAKY QKAVYSNQVS  300
LGMRFRMMFE TEELGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDESA AGERRNRVSI  360
WEIEPVVAPF FICPPPFFGK RPRQPGMQDD ESSEMENLFK RAMPWLGEEI CIKDSQTQST  420
IMPGLSLVQW MNMQQNPSLG NQTLQTEYLR SLAVGAFSRP PQQVQDLAMQ QKQQLQQQQQ  480
HQQLQQQYQQ AQSRMPVKLP VQVNQQLSDQ QIQLQLLQKL QQEQQQQALF SQPRLCNSNS  540
LVQQPLIPQQ CAKTTSQAVR LPQILQNQSQ QKPQQQQIPS SDFPEAVLST TPVTNLIPAS  600
GSSLLAAGGT QSGVTDDIPS CSTSPSANNG SILPHSILNR NGHHNLISTE KTSQSVITML  660
NPSSFEAATT YLSNTAQMDY LDTTSSATSP SMLRYAPPES DIPGTDPRNN VLFGVNIDGS  720
MGIPLTADAL LVNNIDSGKF QNHIPGDAVA NYSTSKDAQQ ELNSWAPAPP PTIQRMRTYT  780
KVYKRGAVGR SMDITRYSGY DELKHDLARM FSIEGQLEDR QRIGWKLVYV DHENDVLLVG  840
DDPWEEFVSC VRCIKILSPQ EVQQMSLDVD LGNNSLPNQA CSSSDGGNAW RGQCDQNSGN  900
PSAGSYDHFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651636445388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403030.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_009403031.10.0PREDICTED: auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM0U0670.0M0U067_MUSAM; Auxin response factor
STRINGGSMUA_Achr9P14090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19