PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P13660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 436aa    MW: 47549.5 Da    PI: 6.6141
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P13660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-15132191155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GSMUA_Achr9P13660_001 132 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 191
                            57*******************666664477446*************************98 PP
2AP247.64.3e-15234285155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSMUA_Achr9P13660_001 234 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 285
                            57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-12132191IPR001471AP2/ERF domain
CDDcd000184.00E-21132201No hitNo description
SuperFamilySSF541711.05E-17132201IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-16133200IPR001471AP2/ERF domain
SMARTSM003807.3E-30133205IPR001471AP2/ERF domain
PROSITE profilePS5103219.23133199IPR001471AP2/ERF domain
PRINTSPR003671.6E-6134145IPR001471AP2/ERF domain
PfamPF008475.3E-10234285IPR001471AP2/ERF domain
CDDcd000182.04E-23234295No hitNo description
SuperFamilySSF541715.56E-18234295IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-18235294IPR001471AP2/ERF domain
SMARTSM003801.3E-32235299IPR001471AP2/ERF domain
PROSITE profilePS5103219.045235293IPR001471AP2/ERF domain
PRINTSPR003671.6E-6275295IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDMDATHNWL AFSLSQQPCF LEAFSSVAAP PHHHGGIEGA EEETSAATEL VALASMGPKL  60
EDFLGGPMGR YSSAEDAASP AEGVYDSDLK TIAAGFLRGL PVEQQEPHSA KEAAPKVESR  120
KTTADTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKAAR  180
AYDLAALKYW GPTTTTNFPI SNYEKELEGM KNMTRQEFVA SLRRKSSGFS RGASIYRGVT  240
RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDIN  300
SIVNNDLPIG GLSGRPSKAS ESSPSSSSDC MSQDHDYWSL LALHHQPSGF GLFSSGDTMD  360
FATATSSKGM LEHQQEQSQS SSYSPVPCAT YVACGGGHSY DGSNIMGGWA APPSSYQQPA  420
SKPHVAAFQS AIFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417476.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-139AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLM0U0240.0M0U024_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P13660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-132AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]