PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P09790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 263aa    MW: 29264 Da    PI: 7.3914
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P09790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-171462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W+++Ed ll  +v+++G+g +W t ++++g++R++k+c++rw++yl
  GSMUA_Achr9P09790_001 14 KGPWSPDEDALLRSYVEKHGTGgNWITLPQKIGLKRCGKSCRLRWLNYL 62
                           79*********************************************97 PP
2Myb_DNA-binding40.56.2e-1369111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +++eEd l+  +    G++ W+ Ia++++ gRt++++k++w++
  GSMUA_Achr9P09790_001  69 GGFSEEEDNLICSLYISIGSR-WSIIAAHLP-GRTDNDIKNYWNT 111
                            569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.377962IPR017930Myb domain
SuperFamilySSF466891.18E-2711109IPR009057Homeodomain-like
SMARTSM007171.6E-121364IPR001005SANT/Myb domain
PfamPF002493.8E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-241569IPR009057Homeodomain-like
CDDcd001671.89E-91662No hitNo description
PROSITE profilePS5129421.99163117IPR017930Myb domain
SMARTSM007174.8E-1267115IPR001005SANT/Myb domain
PfamPF002491.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2370117IPR009057Homeodomain-like
CDDcd001675.54E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPD EDALLRSYVE KHGTGGNWIT LPQKIGLKRC GKSCRLRWLN  60
YLRPDIKHGG FSEEEDNLIC SLYISIGSRW SIIAAHLPGR TDNDIKNYWN TKLKKKLFGK  120
QRTDRRQCRS IGSAKQESDR FDYGGLGIVI DGVGQNDFWT STSIRELHGE VGERSSSDGV  180
SYQSPLVAPS SPLPQPLRED SASLASSSLP GVSTDLDELF QFDLVKLEGL DFFNGFEGMK  240
NSNEVSPLVC PSVVQAHNEV LQW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416793.10.0PREDICTED: transcription repressor MYB6
TrEMBLM0TYY80.0M0TYY8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P09790_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-79myb domain protein 84