PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P05460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 364aa    MW: 39518 Da    PI: 7.356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P05460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12.1e-29145202359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ +p +++itY+ eH+h+
  GSMUA_Achr9P05460_001 145 DMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCQARKQVERSRAEPGMLVITYTAEHDHP 202
                            99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-29130204IPR003657WRKY domain
PROSITE profilePS5081132.248138204IPR003657WRKY domain
SuperFamilySSF1182904.97E-25141204IPR003657WRKY domain
SMARTSM007749.3E-35143203IPR003657WRKY domain
PfamPF031062.8E-24145202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDDNDWDLRA VVRGCSATAV DPPDPFSSFP SPLPQKGGTG EFFGFPDPME TPTARHQLEE  60
HCKSCIKPHH QRQLQPPPPV PKPSYPSCSP AASVFPAFAT APHQFQQQPR QPHPPVSRNP  120
LRSKRRKNQH KKVVCQVPAD GISPDMWAWR KYGQKPIKGS PYPRGYYRCS SSKGCQARKQ  180
VERSRAEPGM LVITYTAEHD HPVPTHRNSL SGSTRQKLPH PSSAAQPPLA SSGCRGDGEN  240
PLSPGSHPSS SPLSSPAAAA PRANSVENEL FPRGRPRILK HSEEEEEEDE LTVGDVEMMG  300
EDDMLFLGME VIDGSTTSTG TTKSPGRVSV SSAFFADDGG FEEYFFQSTW LANSNAAAAA  360
GGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-21132205680Disease resistance protein RRS1
5w3x_D5e-21132205680Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416719.20.0PREDICTED: WRKY transcription factor 22-like
TrEMBLM0TXQ50.0M0TXQ5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P05460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-50WRKY family protein