PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P04630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 297aa    MW: 32909.5 Da    PI: 4.5483
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P04630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-183181155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           ++y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa a++ a+++++g
  GSMUA_Achr9P04630_001 31 CRYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAVEAALAYDDAARAMYG 81
                           78*****999.**********8...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-133181IPR001471AP2/ERF domain
CDDcd000182.52E-273189No hitNo description
PROSITE profilePS5103221.4043289IPR001471AP2/ERF domain
SMARTSM003802.5E-323294IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-203289IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-293289IPR001471AP2/ERF domain
PRINTSPR003676.6E-103344IPR001471AP2/ERF domain
PRINTSPR003676.6E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDGEERVRRA PAKGSRKGCM RGKGGPENPK CRYRGVRQRT WGKWVAEIRE PNRGSRLWLG  60
TFPTAVEAAL AYDDAARAMY GTMARVNLPG AADVPAMRRE SCETTTTSRK SSAVDGSISR  120
EIDRKVPRFD PRDEVAYSDA TDVSDDWDKD VKLLPKVQQK DDAEKESTTT EACVELRQTG  180
DRDPPTTDGR EEEFSVEEML RMMGADAEAS MPCHLGPVGG DVNWQGISAA DDLALLDLQQ  240
NPDATLWGMA QNPLGFDYGD DSLWRPLGDD WEYGPVEVPK RAELGTFDAD FSSGPRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153389663ATERF1
3gcc_A2e-153389663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416308.10.0PREDICTED: dehydration-responsive element-binding protein 2B
RefseqXP_018686821.10.0PREDICTED: dehydration-responsive element-binding protein 2B
TrEMBLM0TXH20.0M0TXH2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P04630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.15e-31ERF family protein