PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P04330_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 19276.9 Da PI: 7.773 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.1 | 2.7e-42 | 15 | 113 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCkvlrr+C+++C+lapyfp ++ ++f n+h++FGa n++kll+++p+ +r+da+ss++yeA+ar+rdPvyG++gv+++lq+q++ GSMUA_Achr9P04330_001 15 PCAACKVLRRRCTDKCMLAPYFPPTDLRTFTNAHRVFGAGNITKLLQEIPQWQRQDAASSMAYEANARMRDPVYGCTGVVFQLQNQVS 102 7*************************************************************************************** PP DUF260 89 qlkaelallke 99 +l+a+la++++ GSMUA_Achr9P04330_001 103 ELQAQLARAQA 113 *******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.189 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.1E-42 | 15 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MGSASPPPAA GVVGPCAACK VLRRRCTDKC MLAPYFPPTD LRTFTNAHRV FGAGNITKLL 60 QEIPQWQRQD AASSMAYEAN ARMRDPVYGC TGVVFQLQNQ VSELQAQLAR AQAAVANLHA 120 ENANLTALIC ERMSQALQET TAVTVDGIAP TPYVFQNDSF FLDGSSVPGY TREPPLRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-39 | 7 | 112 | 3 | 108 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-39 | 7 | 112 | 3 | 108 | LOB family transfactor Ramosa2.1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009416706.1 | 1e-130 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 6e-54 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | M0TXE2 | 1e-129 | M0TXE2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P04330_001 | 1e-130 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-41 | LOB domain-containing protein 11 |