PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P03910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 645aa    MW: 71275 Da    PI: 8.2393
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P03910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07545594147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                            r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  GSMUA_Achr9P03910_001 545 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 594
                            6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.09E-6350438IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.905.9E-4355426No hitNo description
PROSITE profilePS5129414.733540599IPR017930Myb domain
SMARTSM007171.9E-7544597IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-10545595IPR009057Homeodomain-like
SuperFamilySSF466894.44E-15546627IPR009057Homeodomain-like
CDDcd116602.00E-17546596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MMLQKRLDYG FSGCQVPAML YFPKSAKRKR SARRKVENKQ LCAIDLLATV AGELLSEREN  60
CAPSPQCIDG ASGTTNTSKA SVKPDHLCQK EPLKTEPFDQ HSCNDTVLGP EVATKRQISY  120
AIARESKTLN NRVDIIEGDG LTGFQESENQ MPGNGLDINA VGIYGMEDSM DLDTKPPALV  180
SSDSSTEVPV CWNYLPSNSS LPKQESGMEH VVDRDDDDNS SGCTHLSTIT NKACRPRCIG  240
NHRVRKLSTL KYWRAAPNIL KYSHISDYDT EKKRSLHGKK IYYTRQRTQR SYCKRRKLFE  300
RCLVSASNGG MYSGDIPNLC EMGGIGTEAH DPRTAVLDTY DASPSQAEQS SSYNSVKLRI  360
KSFMVPELFI EIPETATVGS LKQTVMEAVT AFLQGGMSIG VLLQGKKVRD DNKTLRQTGI  420
SCSDKLDNLG FTLEPSLTQT PPPLTSLRGP HFLCLDDAVE PLARIPPGAL SIDQEATDST  480
PQAVLTSSPV SDHEPIHSPT DASSLDQTPA DKLALVALPP VSIEALAVVP LRKPRHPEHV  540
QRRIRRPFSV AEVEALVQAV EKLGTGRWRD VKLRAFDSAK HRTYVDLKDK WKTLVHTARI  600
SPQQRRGEPV PQELLDRVLS AQAFWSQQQS KLHAKPPAAE PCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-515326364108Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416231.10.0PREDICTED: telomere repeat-binding protein 2-like
RefseqXP_009416232.10.0PREDICTED: telomere repeat-binding protein 2-like
TrEMBLM0TXA00.0M0TXA0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P03910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-88TRF-like 2