PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P27010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 321aa    MW: 34279.7 Da    PI: 6.902
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P27010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.33.3e-32137192359
            ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                            +vrYkeCl+NhAa +Ggh++DGCgEfmp+ ge +t+ +lkCaACgCHR+FHR+e++ 
  GSMUA_Achr8P27010_001 137 SVRYKECLRNHAAGIGGHVLDGCGEFMPE-GEPSTPGGLKCAACGCHRSFHRKETDG 192
                            69**************************8.8889********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-18138191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.3E-29138190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-27139189IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.889140189IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.4E-28229298IPR009057Homeodomain-like
SuperFamilySSF466896.1E-18230297IPR009057Homeodomain-like
TIGRFAMsTIGR015656.1E-25236292IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEYKNQAAVV DEEDDEEEEI ELPSSTSLGY NPPPPPPPIR GSAFSKPVLN PFSSLISPSR  60
GGGGSGSGSS AARNSGFYGI TTPSSVHPTT AAAVDHQVSL SVVRNSDPVA VGGATTPDSK  120
STAAARNSTS AATADVSVRY KECLRNHAAG IGGHVLDGCG EFMPEGEPST PGGLKCAACG  180
CHRSFHRKET DGDNEATDPY YRVAARNASA SGGTTTESSS EERINAGAPT PATAQRKRFR  240
TKFTVEQKEK MLAFADRVGW RIQKQDEAQV QEFCAKAGVR RQVLKVWMHN NKHLFKKQQQ  300
PASEDEPSAQ QHLHQPHPPQ D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-262372931874ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6203521e-103JX620352.1 Gossypium hirsutum clone NBRI_GE66576 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415270.10.0PREDICTED: zinc-finger homeodomain protein 6-like
TrEMBLM0TU040.0M0TU04_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P27010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-55homeobox protein 22